We are on the same boat. I also have 2 perp in my ak and 2 dragon emblem on my hunter. It's useless to have an extra on one character. They should give us option an options to atleast seal them and trade them. I think we are entitled to have this option since we did pay real money to buy those keys.
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On another note perp can be farmed unlike emblem....so I don't think it that lucky.